PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00119141001

Common Name

GSBRNA2T00119141001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 1033aa MW: 114140 Da PI: 8.3982

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00119141001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.4	4.6e-39	130	207	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++ GSBRNA2T00119141001 130 VCQVDNCCQDLSHGKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 207 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-32	124	192	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.573	128	205	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-35	129	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-27	131	204	IPR004333	Transcription factor, SBP-box
CDD	cd00204	6.90E-10	786	920	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.6E-8	786	934	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.13E-8	788	924	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	10.445	829	939	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MEEVGAQVAA PLFIHQSLSP MGRKRNLYHH QMPNRLVPPS QPRDEWNSNL WDWDSRRFEA 60 KPVDAEPLRL GSQSQSQSQS QTQFDLTSRK VGEERGLDLN LGSCLNAAEA ARPSKKGRSG 120 SPGTGGNYPV CQVDNCCQDL SHGKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHL 180 LSEFDEGKRS CRRRLAGHNR RRRKTTQPEE VASGVVAPGN RDSTSNANMD LMALLTALAC 240 AQGKNEVRPM GSPAVPQREQ LLQILNKINA LPLPMDLVSK LNSIGSLARK NTDHPVANPQ 300 NDVNGDSPST MDLLAVLSET LGSSSPDTLA ILSQGGFGTK ENDKAKLSSY DHVATTNVEK 360 RTVGGERSSS SNQSPSQDSD SHAQDTRSSL SLQLFTSSPE DESRRPAVAS SRKYYSSASS 420 NPVEDRSPSS SPVMQELFPL QRSPETMRSK NHNNTSPVRT AGCLPLDLFG TSNRGAANPN 480 FKGFGQQCGY ASSGSDYSPP SLNSDAQDRT GKIVFKLLDK DPSQLPGTLR TEIYNWLSSI 540 PSEMESYIRP GCVVLSVYVA MSPAAWEQLE QNLQQRVAVM LQDSHSGFWR DSRFIVNTGR 600 QLASHKNGRI RCSKSWRTWN SPELISVSPV AVVAGEETSL VVRGRSLTND GISIRCTQMG 660 SYVSMEASGA ACKRAIFDEL NVKCFRVNNT QPGFLGRCFI EVENGFRGDS FPLIIANASI 720 CKELNRLEEE FHPKSQEQAQ TSDHRPTSRE ETLCFLNELG WLFQKNQTTE PLEQSEFSLS 780 RFKFLLVCSV ERDYCAVIRT LLDMLVERNV VNDEPNREAL DMLAEIQLLN RAVKRKSTKM 840 VELLIHYSVN LGSSKKLVFL PNITGPGGIT PLHLAACTSD SDDMVDLLTN DPQEIGLSSW 900 NSLCDATGQT PYRYAAMRNN HTYNSLVARK LADKRNKQVS LNIESEIVVD QLGLSRRSST 960 EMNKSSCASC ATVALKYRRR ASGSHRLFPT PIIHSMLAVA TVCVCVCVFM HAFPIVRQGS 1020 HFSWGGLDYG SI*

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MEEVGAQVAA PLFIHQSLSP MGRKRNLYHH QMPNRLVPPS QPRDEWNSNL WDWDSRRFEA  60
KPVDAEPLRL GSQSQSQSQS QTQFDLTSRK VGEERGLDLN LGSCLNAAEA ARPSKKGRSG  120
SPGTGGNYPV CQVDNCCQDL SHGKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHL  180
LSEFDEGKRS CRRRLAGHNR RRRKTTQPEE VASGVVAPGN RDSTSNANMD LMALLTALAC  240
AQGKNEVRPM GSPAVPQREQ LLQILNKINA LPLPMDLVSK LNSIGSLARK NTDHPVANPQ  300
NDVNGDSPST MDLLAVLSET LGSSSPDTLA ILSQGGFGTK ENDKAKLSSY DHVATTNVEK  360
RTVGGERSSS SNQSPSQDSD SHAQDTRSSL SLQLFTSSPE DESRRPAVAS SRKYYSSASS  420
NPVEDRSPSS SPVMQELFPL QRSPETMRSK NHNNTSPVRT AGCLPLDLFG TSNRGAANPN  480
FKGFGQQCGY ASSGSDYSPP SLNSDAQDRT GKIVFKLLDK DPSQLPGTLR TEIYNWLSSI  540
PSEMESYIRP GCVVLSVYVA MSPAAWEQLE QNLQQRVAVM LQDSHSGFWR DSRFIVNTGR  600
QLASHKNGRI RCSKSWRTWN SPELISVSPV AVVAGEETSL VVRGRSLTND GISIRCTQMG  660
SYVSMEASGA ACKRAIFDEL NVKCFRVNNT QPGFLGRCFI EVENGFRGDS FPLIIANASI  720
CKELNRLEEE FHPKSQEQAQ TSDHRPTSRE ETLCFLNELG WLFQKNQTTE PLEQSEFSLS  780
RFKFLLVCSV ERDYCAVIRT LLDMLVERNV VNDEPNREAL DMLAEIQLLN RAVKRKSTKM  840
VELLIHYSVN LGSSKKLVFL PNITGPGGIT PLHLAACTSD SDDMVDLLTN DPQEIGLSSW  900
NSLCDATGQT PYRYAAMRNN HTYNSLVARK LADKRNKQVS LNIESEIVVD QLGLSRRSST  960
EMNKSSCASC ATVALKYRRR ASGSHRLFPT PIIHSMLAVA TVCVCVCVFM HAFPIVRQGS  1020
HFSWGGLDYG SI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	120	204	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8352	0.0	leaf\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00119141001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353554	0.0	AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013742040.1	0.0	squamosa promoter-binding-like protein 14
Refseq	XP_013742041.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A3P6FJQ4	0.0	A0A3P6FJQ4_BRAOL; Uncharacterized protein
STRING	Bo5g030930.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]