PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119294001
Common NameGSBRNA2T00119294001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 196aa    MW: 21319.9 Da    PI: 9.6846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119294001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-184292155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++ a ++l+g
  GSBRNA2T00119294001 42 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDVALLCLKG 92
                         59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.07643100IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2043102IPR016177DNA-binding domain
PfamPF008473.3E-114392IPR001471AP2/ERF domain
SMARTSM003807.7E-3643106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3043102IPR001471AP2/ERF domain
PRINTSPR003674.2E-94455IPR001471AP2/ERF domain
CDDcd000181.05E-2846100No hitNo description
PRINTSPR003674.2E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVKQEPKIQT SSKKEMSLCS PSRSSSLSSS SPKIKNKKSK IKKYKGVRMR SWGSWVSEIR  60
APNQKTRIWL GSYSTAEAAA RAYDVALLCL KGPRANLNFP TSSSYSLSQQ LLDENIILSP  120
KSIQRVAAQA ANSSFDLLSP SSSTSSSSAT SSPSDQEQHH DDNDDDGMQS LIGSFVDNHV  180
SLMDPSSSCM FMKEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1642100160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142190.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119294001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0134821e-104AC013482.2 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence.
GenBankAK1766791e-104AK176679.1 Arabidopsis thaliana mRNA for TINY like protein, complete cds, clone: RAFL25-22-A03.
GenBankAY0859251e-104AY085925.1 Arabidopsis thaliana clone 19721 mRNA, complete sequence.
GenBankBT0246161e-104BT024616.1 Arabidopsis thaliana At1g21910 mRNA, complete cds.
GenBankCP0026841e-104CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584119.11e-129PREDICTED: ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE41e-69ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0D3CC821e-136A0A0D3CC82_BRAOL; Uncharacterized protein
STRINGBo5g034880.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.17e-57ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]