PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119475001
Common NameGSBRNA2T00119475001, LOC106401656
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 135aa    MW: 14573.1 Da    PI: 8.4614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119475001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-171262155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  GSBRNA2T00119475001 12 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFYCLHQ 62
                         89*****998.**********943...5*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-81260IPR001471AP2/ERF domain
CDDcd000182.39E-271274No hitNo description
SuperFamilySSF541711.7E-171273IPR016177DNA-binding domain
PROSITE profilePS5103221.3511372IPR001471AP2/ERF domain
SMARTSM003801.2E-311378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-251373IPR001471AP2/ERF domain
PRINTSPR003676.2E-91425IPR001471AP2/ERF domain
PRINTSPR003676.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDYIDNTGET QSKYKGIRRR KWGKWVSEIR VPGTRDRLWL GSFSTAEGAA VAHDVAFYCL  60
HQPNSLESLN FPHLLPPSIV SKTSPRSIQQ AASNAGMAVD AGIVNSDHAS GNSGNGDTTT  120
AYYENGDTAT QKKQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281100.0microspore-derived embryo
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119475001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553400.0AC155340.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH020D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697657.11e-97ethylene-responsive transcription factor ERF019 isoform X2
SwissprotO805424e-75ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A078G7K56e-92A0A078G7K5_BRANA; BnaA09g30360D protein
TrEMBLM4E6Y46e-92M4E6Y4_BRARP; Uncharacterized protein
STRINGBra024539.1-P1e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-77ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]