PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119510001
Common NameGSBRNA2T00119510001, LOC106345309
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 302aa    MW: 34613.9 Da    PI: 6.3254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119510001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15112163155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  GSBRNA2T00119510001 112 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 163
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-12110167No hitNo description
Gene3DG3DSA:4.10.280.101.8E-14110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17111175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPLGAVVYPQ DTSGYLSNCK DFMFYDLSYQ EEVVAQDTKN NIDTLGQEQS FVEKDEEERQ  60
WRDYHHKYPL IPLLDEKLDL RATDVENHPP IQPRRKRRRT RSNKNKEEIE SQRMTHIAVE  120
RNRRKQMNEY LAVLRSLMPS SYAQRGDQAS IVGGAINYVK ELEHILQSME PRRTTTTTHE  180
VDTSTSSLMS PFSEFFTYPQ YSTKSSSSAT ENSSSPAEIE VTVAEGHANI KIMSKKKPRQ  240
LLKLVDSIQS LRLTLLHLNV TTLDNSILYS ISVKVEEGSQ LNTVDDIATA LNQIIRRIQE  300
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498RKRRR
29499RKRRRT
3112123RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119510001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584555.10.0PREDICTED: transcription factor bHLH94-like
RefseqXP_013639984.10.0transcription factor bHLH94
RefseqXP_022550257.10.0transcription factor bHLH94-like
SwissprotQ9SK911e-162BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D3CCF40.0A0A0D3CCF4_BRAOL; Uncharacterized protein
STRINGBo5g038570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-154bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]