PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119532001
Common NameGSBRNA2T00119532001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 227aa    MW: 25266.1 Da    PI: 7.7807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119532001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k Fs++  L  H++ H
  GSBRNA2T00119532001 73 FACTFCKKEFSTSQALGGHQNAH 95
                         78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-670100No hitNo description
Gene3DG3DSA:3.30.160.603.6E-57199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.8E-67297IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65573100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MELNLTTPTS CSSSSISSSS HEMGFLTDTK GKMKEKIADG QATETPRVEF RFLFNNDNIR  60
NSGTKNEAKA RVFACTFCKK EFSTSQALGG HQNAHKQERS LAKRRKEIEI NYPGHSFYSQ  120
YPPSGVSNSN SSQYDLGVRC NPNIGKYKAY PLNIFRCRLG YRGLNINSHV PLLSQLSCPN  180
TDDFSINLIS NLEGSIHMNK EDQGDKEDQS DSDTCKDTEI DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119532001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893621e-145AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640138.21e-157uncharacterized protein LOC106345479
TrEMBLA0A398AC281e-155A0A398AC28_BRACM; Uncharacterized protein
TrEMBLM4EJE81e-155M4EJE8_BRARP; Uncharacterized protein
STRINGBra028914.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-85C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]