PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00119554001

Common Name

GSBRNA2T00119554001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 311aa MW: 37006.7 Da PI: 6.8143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00119554001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.7	3.1e-23	45	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+ +r+e+++++ ++k++k lWe v +km+++gf rs++qCk+kw+nl ryk ++++e + + ++++p++++++ GSBRNA2T00119554001 45 QWSIDETKELLGIREELDQTFMETKRNKLLWEVVVAKMADKGFARSAEQCKSKWKNLVSRYKVCETTEPE---PIRQQFPFYNEIQ 127 7******************************************************************8...566789*9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	3.98E-20	44	106	No hit	No description
Pfam	PF13837	8.5E-20	45	129	No hit	No description
PROSITE profile	PS50090	7.445	46	102	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDRRNPFHHH DHQLYQLIQQ QQLPPPPQST TVAMDLGGGG ERIPQWSIDE TKELLGIREE 60 LDQTFMETKR NKLLWEVVVA KMADKGFARS AEQCKSKWKN LVSRYKVCET TEPEPIRQQF 120 PFYNEIQSIF TARMQRMLWS EPRTSSKRKH NQFSSDEEVE EVAELNQDIN KELLSFVETQ 180 KKDTEVITTS TFTNPKKRAK KGKGTSKAET AGSTLKEMLE DFMRQTVKME KEWRDTWEMK 240 AREKEKREKE WQRRMAELEE ERAAAERRWM EREDERRLRE EARAQKRDTL IDVLLNQLNR 300 DQDDDQHQGF *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269\|PubMed:15044016}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00119554001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240935	0.0	AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125422.1	0.0	PREDICTED: trihelix transcription factor GT-3a-like
Refseq	XP_013731790.2	0.0	trihelix transcription factor GT-3a-like
Swissprot	Q9SDW0	1e-136	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A398A5Y0	0.0	A0A398A5Y0_BRACM; Uncharacterized protein
STRING	Bo2g001280.1	1e-179	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-107	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]