PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119603001
Common NameGSBRNA2T00119603001, LOC106424010, LOC106425286
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 269aa    MW: 29048.6 Da    PI: 7.3988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119603001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017110132123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+ksF +   L  H  +H
  GSBRNA2T00119603001 110 YQCKTCDKSFHSFQALGGHRASH 132
                          9*********9988888887776 PP
2zf-C2H211.60.00084176198123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+  Fs+   L  H+r+H
  GSBRNA2T00119603001 176 HECSICKAEFSSGQALGGHMRRH 198
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.6E-10109132No hitNo description
PfamPF139125.8E-12109134IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658110137IPR007087Zinc finger, C2H2
SMARTSM003550.041110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-10171198No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4173200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12175200IPR007087Zinc finger, C2H2
SMARTSM003550.031176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTSFHEETRL VLLTKGKRTK RPRSSSPHMN AEAVSGVCSE DRSLEAKEGA GEVEFQGATD  60
EDQDMANCLM LLSQGHKEKS SGDHSSTLKI GFLTDKKPVA SLGLGLDGVY QCKTCDKSFH  120
SFQALGGHRA SHKKPKRDEK NSASAVETVE SAEAVGSFLS LQVSSSDGSK KPEKTHECSI  180
CKAEFSSGQA LGGHMRRHRG LNVNANATSI TKAVLSSSHH QEPIRPKNFL ELDLNLPAPE  240
DEPKFVFASK DQMLLFASAS NSLIDCHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119603001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721473.10.0zinc finger protein ZAT5-like
TrEMBLA0A398A8B60.0A0A398A8B6_BRACM; Uncharacterized protein
TrEMBLM4EJ650.0M4EJ65_BRARP; Uncharacterized protein
STRINGBra028831.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]