PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119735001
Common NameGSBRNA2T00119735001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 157aa    MW: 17255.6 Da    PI: 9.2893
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119735001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-12126150126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk elC  fa+ G+C+yGdrC+FaHg
  GSBRNA2T00119735001 126 YKSELCEKFAA-GECNYGDRCHFAHG 150
                          9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547914.09E-1054112IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-954112IPR004088K Homology domain, type 1
PfamPF000139.3E-655103IPR004088K Homology domain, type 1
PROSITE profilePS5008410.52557106IPR004088K Homology domain, type 1
CDDcd001058.80E-657102No hitNo description
Gene3DG3DSA:4.10.1000.101.9E-15123155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8124155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469125152IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8125151IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9126150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDTHKRGHSD TVSSSNSNVG FKRPKQGKPF HSPLQQLILL LALLIASVAA KIIVTTIIGK  60
DGNRTKQICR ETGVKLPIVD HERGPNLKNV EIDGNYDQIN EANGRMRELI RRFGSDPANS  120
APRSSYKSEL CEKFAAGECN YGDRCHFAHG VAELRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119735001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616756.11e-77PREDICTED: zinc finger CCCH domain-containing protein 52-like
SwissprotQ9FG301e-33C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLM4EIV41e-113M4EIV4_BRARP; Uncharacterized protein
STRINGBra028719.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2156134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-36C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]