PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119816001
Common NameGSBRNA2T00119816001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 228aa    MW: 25383.4 Da    PI: 9.6421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119816001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  GSBRNA2T00119816001 14 KGAWTKEEDQRLIDYIRIHGEGSWRSLPKSAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding54.13.7e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+++ eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  GSBRNA2T00119816001  67 RGNFSDEEDKVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.999961IPR017930Myb domain
SuperFamilySSF466891.37E-2913108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-161461IPR001005SANT/Myb domain
CDDcd001673.14E-111661No hitNo description
PROSITE profilePS5129427.23262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2765116IPR009057Homeodomain-like
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002492.5E-1567111IPR001005SANT/Myb domain
CDDcd001671.63E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR IHGEGSWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDKVIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLRSHG  120
IDPQTHRPIK DSIANGAVDN SFTVRPKTDI SSDNVASTSG TTTDEDLRQN GDCYYNDNSG  180
EKEVNLDLTL GSGSTSLVRS GRKSGTGSSA DSKPWWDPVM AARLSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
1h8a_C4e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.159801e-128root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119816001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325090.0AC232509.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022554986.11e-162transcription repressor MYB6-like
SwissprotQ388511e-131MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A3P6A9821e-148A0A3P6A982_BRACM; Uncharacterized protein
STRINGBo3g044210.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-128myb domain protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]