PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119831001
Common NameGSBRNA2T00119831001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 153aa    MW: 16774.5 Da    PI: 8.5753
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119831001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS29.59.3e-102694473
                 GRAS  4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73
                         +L++cA+++s+++l  a++++  l+ ++s +g+p+q l  y++e+  ar+a  + ++yk l++ e ++++
  GSBRNA2T00119831001 26 VLTACAKVISENNLLTARWCMGVLRSMVSISGKPIQCLGGYMLEGFLARVAA-TGSIYKYLRSIEPESYD 94
                         79*************************************************9.99999999888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.2E-72694IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVSPFTSLAS GALTANPPFK GELKWVLTAC AKVISENNLL TARWCMGVLR SMVSISGKPI  60
QCLGGYMLEG FLARVAATGS IYKYLRSIEP ESYDFVSYEM GDDKMAHSKL QDNLKKLQGI  120
SLKTTEMEDT AKPFYCKGTV ECCEFKKQSS KS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119831001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013703110.12e-32scarecrow-like protein 21 isoform X1
RefseqXP_013703111.12e-32scarecrow-like protein 21 isoform X2
SwissprotQ9S7H51e-31SCL21_ARATH; Scarecrow-like protein 21
TrEMBLA0A0D3B7W34e-63A0A0D3B7W3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B5453e-63A0A3P6B545_BRAOL; Uncharacterized protein
STRINGBo3g044350.16e-64(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.15e-34SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]