PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00119961001

Common Name

GSBRNA2T00119961001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1032aa MW: 115323 Da PI: 9.7101

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00119961001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.3e-07	45	77	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT+ E e+++d+ +++G + W+++a+ + + R+ GSBRNA2T00119961001 45 QWTKAELERFYDYYRKYGQD-WRKVAAAIRNSRS 77 6***************99.***99886666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.14E-7	44	92	IPR009057	Homeodomain-like
CDD	cd00167	0.00734	46	89	No hit	No description
SMART	SM01135	3.2E-61	621	722	IPR033471	DIRP domain
Pfam	PF06584	4.8E-32	621	721	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MAPAVRKSRS VNKRFTNEPS PRKDAGSSRK SKQRKTKFSD KLGPQWTKAE LERFYDYYRK 60 YGQDWRKVAA AIRNSRSVDM VEALFNMNKA YLSLPEGTAS VAGLIAMMTD HYSVMEGSGS 120 EGEGLDVPEA PRKQQKRKRA KPQLSDSREE DDRQQHPVAS SDGCLKFLKQ ARANGTHRRA 180 TGKRTPRVPV QTSRDDGEGA TPPNKRARKQ RDANDDVAAH FLALTLKDAS RREGSPQVSE 240 SPNKRIEPSD NSPIKSWGKM SRTRKASREK KLESDREDVE GVGEMEAPRK VKRVYKKRVR 300 VEEAECNDSD DNGGACSATE GRRIKSKRRK AGVEASRGTY SPRSPKEEDN KFTSGDEFDA 360 LQALADLSAS FLPGALMESE SSAQLKEERI ENDMDEKSSS PDDSHGEKAD SEPDDSLLHA 420 ISAIGNAAYS RKPKSSRQPS TDCNAVPTEK LEPEPISGSS RRKRKPKKLW DETPAESTRK 480 KSTNKQKELA QEDVNMKSSL RTKRSGQGPP QSKQLKAVKE LEESTTTTSD KKRSAMDVVE 540 VATTKEVSDS GAASIPQKPP NRRKMSLKKS LQERDNKSSE TIHKASRSSR SLSEQELLLK 600 DKLSTSLSHP LARRRCMFEW FYSAIDHPWF AKMEFVDYLN HVGLGHIPRL TRLEWSVIKS 660 SLGRPRRFSE RFLQEEREKL KQYRESVRKH YTELRTGARE GLPTDLARPL AVGNRVIAIH 720 PKTREIHDGK ILTVGHSQCN VLFDDLGVEL VKDIDCMPSN PLEYMPEGLR RQVDKCLSIK 780 KEAQLSGVSV IFPPCGLENV DFSMNQSLNQ GDMVAPILHG KVLASPHQTS QPCIINYSKG 840 REAEIQRVLA LQHALDEKEM EPEMVEIVKG SKTRAQAMVD AAIKAASSVK EGEDAIKMIQ 900 EALDMVGKHQ PLRSSVVKHE EHANGGVEHH QNPSPSSDAS KPVANNDFIS QDGSEKNEAQ 960 MPSELVTSCV ASWLMIQMCT ERQYPPSDVA QLIDTAVTSL QPRCPQNLPI YREIQMCMGR 1020 IKTQILSLVP S*

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MAPAVRKSRS VNKRFTNEPS PRKDAGSSRK SKQRKTKFSD KLGPQWTKAE LERFYDYYRK  60
YGQDWRKVAA AIRNSRSVDM VEALFNMNKA YLSLPEGTAS VAGLIAMMTD HYSVMEGSGS  120
EGEGLDVPEA PRKQQKRKRA KPQLSDSREE DDRQQHPVAS SDGCLKFLKQ ARANGTHRRA  180
TGKRTPRVPV QTSRDDGEGA TPPNKRARKQ RDANDDVAAH FLALTLKDAS RREGSPQVSE  240
SPNKRIEPSD NSPIKSWGKM SRTRKASREK KLESDREDVE GVGEMEAPRK VKRVYKKRVR  300
VEEAECNDSD DNGGACSATE GRRIKSKRRK AGVEASRGTY SPRSPKEEDN KFTSGDEFDA  360
LQALADLSAS FLPGALMESE SSAQLKEERI ENDMDEKSSS PDDSHGEKAD SEPDDSLLHA  420
ISAIGNAAYS RKPKSSRQPS TDCNAVPTEK LEPEPISGSS RRKRKPKKLW DETPAESTRK  480
KSTNKQKELA QEDVNMKSSL RTKRSGQGPP QSKQLKAVKE LEESTTTTSD KKRSAMDVVE  540
VATTKEVSDS GAASIPQKPP NRRKMSLKKS LQERDNKSSE TIHKASRSSR SLSEQELLLK  600
DKLSTSLSHP LARRRCMFEW FYSAIDHPWF AKMEFVDYLN HVGLGHIPRL TRLEWSVIKS  660
SLGRPRRFSE RFLQEEREKL KQYRESVRKH YTELRTGARE GLPTDLARPL AVGNRVIAIH  720
PKTREIHDGK ILTVGHSQCN VLFDDLGVEL VKDIDCMPSN PLEYMPEGLR RQVDKCLSIK  780
KEAQLSGVSV IFPPCGLENV DFSMNQSLNQ GDMVAPILHG KVLASPHQTS QPCIINYSKG  840
REAEIQRVLA LQHALDEKEM EPEMVEIVKG SKTRAQAMVD AAIKAASSVK EGEDAIKMIQ  900
EALDMVGKHQ PLRSSVVKHE EHANGGVEHH QNPSPSSDAS KPVANNDFIS QDGSEKNEAQ  960
MPSELVTSCV ASWLMIQMCT ERQYPPSDVA QLIDTAVTSL QPRCPQNLPI YREIQMCMGR  1020
IKTQILSLVP S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	141	QKRKRAKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8743	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00119961001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586682.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A3P6EQW2	0.0	A0A3P6EQW2_BRAOL; Uncharacterized protein
STRING	Bo5g145450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	7e-80	DNA binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]