PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119998001
Common NameGSBRNA2T00119998001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 180aa    MW: 20294.9 Da    PI: 9.8377
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.55.2e-2951110258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++YVN+KQy++I++RRq+Rak+++   ++kl++++rkpy+h+SRh hAlrRpRgsgGrF
  GSBRNA2T00119998001  51 GTIYVNSKQYHGIIRRRQSRAKAASvlhHNKLSSRGRKPYMHHSRHLHALRRPRGSGGRF 110
                          689*********************999999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-2948113IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.3549113IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-215274IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.7E-2452110IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-2187110IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKPPCLEFGF SQPQMYTKYP CVEEEYYGVV VSAYGSQSRV MLPLNMETED GTIYVNSKQY  60
HGIIRRRQSR AKAASVLHHN KLSSRGRKPY MHHSRHLHAL RRPRGSGGRF LNTKSQKADD  120
TKQTQSQPQK SNSQNSEVIH PEGQIMNLSH GLNVSVSEVT SMNYFLTAAM DNGCLDFNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-1750113262HAPB protein
4g92_A3e-1750113262HAPB protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119998001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529911e-117AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696108.11e-126LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-2
SwissprotQ9M9X42e-94NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A078G0253e-94A0A078G025_BRANA; BnaAnng02740D protein
TrEMBLA0A0D3AFG32e-94A0A0D3AFG3_BRAOL; Uncharacterized protein
TrEMBLA0A398AU282e-94A0A398AU28_BRACM; Uncharacterized protein
STRINGBo1g150420.14e-95(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.14e-86nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]