PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120085001
Common NameGSBRNA2T00120085001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 445aa    MW: 47109.7 Da    PI: 7.9176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120085001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-124570227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG C yG+rC+F+H++
  GSBRNA2T00120085001 45 DEPDCIYYLRTGACGYGSRCRFNHPR 70
                         6899********************96 PP
2zf-CCCH38.42e-1295120227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f+rtGtCk+G++Ck++H++
  GSBRNA2T00120085001  95 GQPVCQHFMRTGTCKFGATCKYHHPR 120
                          5789********************96 PP
3zf-CCCH37.63.7e-12141165226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  GSBRNA2T00120085001 141 GEKECSYYLRTGQCKFGLTCRFNHP 165
                          7899********************9 PP
4zf-CCCH406.7e-13291315226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG Ck+G++C+++H+
  GSBRNA2T00120085001 291 DQPECQYFMRTGDCKFGSSCRYHHP 315
                          689*********************9 PP
5zf-CCCH32.71.3e-10338363227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa+ G+Ck+G+ CkF H++
  GSBRNA2T00120085001 338 GVAQCTHFAQHGICKFGPACKFDHSM 363
                          6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4464371IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-54370IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-104570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-54970IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9293121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-694120IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-1095120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-598120IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54139167IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6141169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4145164IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155289317IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10291315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6292318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5295315IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723336364IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8338362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5339364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4342363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSLEW TTALQTGVQA SVWRAGGESY PERPDEPDCI YYLRTGACGY  60
GSRCRFNHPR DRGAVVGGVR GGGGGGDGAL PERMGQPVCQ HFMRTGTCKF GATCKYHHPR  120
QGGGSVAPVS LSYLGYPLRP GEKECSYYLR TGQCKFGLTC RFNHPVPQQQ QQPQPQPQLH  180
TIYPTLQSQP SQQYGLVLAR PSLLPGSYLP SHYGPPMVLP PGMVTYPGWN PYQPSLTAMP  240
SPGTQPSIGP SSVYGMAPLS PSGAAYTGTY QSGGPSSLTI SKEEPFPQRP DQPECQYFMR  300
TGDCKFGSSC RYHHPLDAVQ PKTGVVLFSS IGLPLRPGVA QCTHFAQHGI CKFGPACKFD  360
HSMSSSLSYS PSASSLTDMP VAPYPIGSSS LSGASAPVSL SNEPTTEAVT AVSSPMVSGQ  420
EPAETSGDSA SVSGSIEAKT SSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.66550.0flower| microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120085001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638316.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_013693190.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A0D3CMB90.0A0A0D3CMB9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EQJ50.0A0A3P6EQJ5_BRAOL; Uncharacterized protein
STRINGBo5g143520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]