PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120181001
Common NameGSBRNA2T00120181001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 378aa    MW: 42473.7 Da    PI: 6.5161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120181001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.7e-171056248
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         +i+nks r+ tf kR+ g +KKA+ELS+LC+++v+ +i s ++   e
  GSBRNA2T00120181001 10 FINNKSIRNQTFKKRKRGFMKKAKELSTLCGVKVSAVIKSCDNAETE 56
                         89************************************998886555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.124161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-10323IPR002100Transcription factor, MADS-box
CDDcd002667.19E-23385No hitNo description
PfamPF003191.2E-141052IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MRRGRLKLNF INNKSIRNQT FKKRKRGFMK KAKELSTLCG VKVSAVIKSC DNAETEFWPS  60
KEGAEAVHSE FMKVVETQGF SKMHNHESYL LERIQKDGEK ARRLHAENRE IELREVMFDL  120
LKGKTLMPHQ YGDPSFMREL NLFIGGYANR VTYRTQFLEG SVEPVPPNVA GANAPGPVVG  180
DVNPVVVGTE GSVIDPTEAY DNMPQYDGMD MSLNTLPWFN GSSQGMNVNH QESFQYQTPP  240
NSYDQIQPMF NGSSQGMNMK YEEPFLYQPP GNLYDQMQPM FYGSSQDMYT CLGHDQGQSS  300
NQYPNAKQQF MSLLMGRPQQ MSDVQDLASV ASMDDNNNRY QQLPVTSQMP STTTTTAAVN  360
PSGHSINNGC PTRFGLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120181001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619615.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A3P6DIV30.0A0A3P6DIV3_BRAOL; Uncharacterized protein
STRINGBo2g156340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.11e-30M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]