PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00120454001

Common Name

GSBRNA2T00120454001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 361aa MW: 40864.2 Da PI: 4.8598

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00120454001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.3	2.2e-09	1	25	21	45
HHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgk 45 +KKA+ELS+LC+++v+ +i s +++ GSBRNA2T00120454001 1 MKKAKELSTLCGVKVCAVIKSCDNT 25 8******************998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.88E-9	1	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.3E-7	1	24	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MKKAKELSTL CGVKVCAVIK SCDNTEPEFW PSREGAEAVH LEFTNAVQRQ GFSKIHNHES 60 YLSERIQKDG EKARRLHAEN REIELREVMF DLLKGKTLMP HQYGDPSFMR ELNLFIGGYA 120 NRVTYRTQFL EGSVQHVPPN VGGADAPGPV VGDVNPFVVG TEGSVINPTE AYDHMRQYDG 180 MDMSVNDQAP DHVHHQNMNH QEPFQYQCPT NFYDQTQPMF YGSSQGMNTN HHQEPIEYQT 240 PNVYDQIQPM FTGSSQGMNM HYQEPFQYQP PGNLYDQTQP MFYGSNKDMY TGLNYDQGQS 300 SNQYLNQQMS DVQDLASVAS MDQQLPVTSQ MPSTITTTTA AADLYGHSIN NGWPTRFDLD 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MKKAKELSTL CGVKVCAVIK SCDNTEPEFW PSREGAEAVH LEFTNAVQRQ GFSKIHNHES  60
YLSERIQKDG EKARRLHAEN REIELREVMF DLLKGKTLMP HQYGDPSFMR ELNLFIGGYA  120
NRVTYRTQFL EGSVQHVPPN VGGADAPGPV VGDVNPFVVG TEGSVINPTE AYDHMRQYDG  180
MDMSVNDQAP DHVHHQNMNH QEPFQYQCPT NFYDQTQPMF YGSSQGMNTN HHQEPIEYQT  240
PNVYDQIQPM FTGSSQGMNM HYQEPFQYQP PGNLYDQTQP MFYGSNKDMY TGLNYDQGQS  300
SNQYLNQQMS DVQDLASVAS MDQQLPVTSQ MPSTITTTTA AADLYGHSIN NGWPTRFDLD  360
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00120454001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130047.1	0.0	PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBL	A0A3P6B875	0.0	A0A3P6B875_BRACM; Uncharacterized protein
TrEMBL	M4DVI0	0.0	M4DVI0_BRARP; Uncharacterized protein
STRING	Bra020524.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14795	6	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65330.1	8e-29	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]