PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120455001
Common NameGSBRNA2T00120455001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 378aa    MW: 42575.5 Da    PI: 6.0875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120455001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161153244
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         +i+nks r+ tf kR  g +KKA+ELS+LC+++v+ +i s ++
  GSBRNA2T00120455001 11 FIDNKSARNQTFKKRTRGFMKKAKELSTLCGIKVSAVIKSCDN 53
                         8************************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-18261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.764262IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-20396IPR002100Transcription factor, MADS-box
CDDcd002661.32E-23386No hitNo description
PRINTSPR004041.1E-9424IPR002100Transcription factor, MADS-box
PfamPF003198.6E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-92439IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-93960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSTRGRLKLN FIDNKSARNQ TFKKRTRGFM KKAKELSTLC GIKVSAVIKS CDNAEPEFWP  60
SREGAEAVHS EFMKVVETQG FSKMHNHESY LLERIQKDGE KARRLHAENR EIELREVMFD  120
LLKGKTLMPH QYGDPSFMRE LNLFIGGYAN RVTYRTQFLE GSVEPVPPNF AGANAHGPVV  180
DDVNPVVVGT EGSVINPTEA YDHMPQYDGM DMSVNVETQP WFNGSSQGMN VNHQEPFQYQ  240
TPPNSYDHIQ PMFNGSSQGM NMKYEEPFQY QPHGNLYDQM QPMFYGSSQD MYTGLSHDQG  300
QSSNTTQQFM SLLMGRPQQM SDVQDLASVA SMDDNNNRYQ QLPVTSQMPS TTTTTTAAAN  360
LSGHSINNGW PTKFGLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120455001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674463.10.0MADS-box transcription factor PHERES 1-like
TrEMBLA0A3P6AUN70.0A0A3P6AUN7_BRACM; Uncharacterized protein
STRINGBra020525.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.17e-40AGAMOUS-like 36
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]