PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120624001
Common NameGSBRNA2T00120624001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 132aa    MW: 14527.7 Da    PI: 10.3097
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120624001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35.2e-192861134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  GSBRNA2T00120624001 28 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 61
                         ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-132273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.442258IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-122564No hitNo description
Gene3DG3DSA:3.30.50.103.3E-152661IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.05E-122771No hitNo description
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
PfamPF003204.7E-172862IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MLDHSEEEYS ETMKRRAGDA IEQNKKTCAD CGTSKTPLWR GGPAGPKSLC NACGIRNRKK  60
RRGAEDKKQK KTNSGGGDLK RSPKFGESMK QRIMDLGMTK RSTVEKQLRK LGEEEQAAVL  120
LMALSYGSVY A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.285240.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120624001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675406.14e-91GATA transcription factor 16-like
SwissprotQ9FJ101e-63GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0D2ZRJ29e-83A0A0D2ZRJ2_BRAOL; Uncharacterized protein
STRINGBo00847s050.12e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-66GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]