PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00120811001

Common Name

GSBRNA2T00120811001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 341aa MW: 38246 Da PI: 5.9835

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00120811001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.4e-32	184	238	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fveav+qLGG e+A Pk++l++mkv+gLt++hvkSHLQkYR+ GSBRNA2T00120811001 184 KGRVRWTPELHETFVEAVNQLGGMENAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 238 569***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.087	181	241	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-30	182	239	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.4E-17	183	238	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-22	184	238	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-11	186	237	IPR001005	SANT/Myb domain
Pfam	PF14379	4.2E-19	270	315	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
METRPFRSMS SLALTSSVPN PSVNADISFS SEHNQSMASP YHLLSANGGA VGHNIYSNDL 60 HNHPSVASHI GSSSDTPFIS EILDWDHPDL FDFPLDIPIQ TNQMDDILAE LDEELITDDE 120 NPLMYALLND LFLDTSSTSA ASKVQEPTMQ SQIQQPQVVL HQTSPIVRTV SSNSFTSNNT 180 AAAKGRVRWT PELHETFVEA VNQLGGMENA KPKAVLKHMK VQGLTIYHVK SHLQKYRTAR 240 HVPEPSEAGW REKKLTPVEH VTSLDTKSGM YITEALRIQM EVQKQLHEQL EIQRKMQLQI 300 EKQGKALVMM IEKQNMEFGK PEQEEEAEAD SRRSKRPRKG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	183	241	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24348	1e-141	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00120811001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013675976.1	0.0	myb family transcription factor PHL4-like isoform X1
Refseq	XP_013682620.1	0.0	myb family transcription factor PHL4-like isoform X1
Swissprot	Q8GXC2	1e-104	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	M4F5W3	0.0	M4F5W3_BRARP; Uncharacterized protein
STRING	Bra036469.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-104	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]