PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00120947001

Common Name

GSBRNA2T00120947001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 194aa MW: 22811.4 Da PI: 4.549

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00120947001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.8	5.5e-29	17	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+P de+lv +yL+kkv ++++++ ++e++ ++v+PwdL +++e+y+F+k+++++ +k r t sgyW++ +++ GSBRNA2T00120947001 17 LPPGFRFDPDDEDLVFQYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GDKNTEMYYFVKKEERE----KKGRETLSGYWEECEEEE 97 79***********************999..49*********6...55778***99976....6789999*999988 PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s + l g kkt++fy g++p+g+ t W+ e+rl GSBRNA2T00120947001 98 VIESGdrgCNYLEGRKKTFAFYIGQRPRGRITPWIKYEFRL 138 8877554444559************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-32	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	31.948	17	167	IPR003441	NAC domain
Pfam	PF02365	3.8E-17	18	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFQYLAKKVL HRPMDFDLPE LRSCNVDPWD 60 LLGDKNTEMY YFVKKEEREK KGRETLSGYW EECEEEEVIE SGDRGCNYLE GRKKTFAFYI 120 GQRPRGRITP WIKYEFRLLS SRATRWSSSS LPRGAVENWR AVKVIVKEEN EEEIEEDEQA 180 SDESDGEEVV QSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
3swm_A	3e-17	15	139	18	146	NAC domain-containing protein 19
3swm_B	3e-17	15	139	18	146	NAC domain-containing protein 19
3swm_C	3e-17	15	139	18	146	NAC domain-containing protein 19
3swm_D	3e-17	15	139	18	146	NAC domain-containing protein 19
3swp_A	3e-17	15	139	18	146	NAC domain-containing protein 19
3swp_B	3e-17	15	139	18	146	NAC domain-containing protein 19
3swp_C	3e-17	15	139	18	146	NAC domain-containing protein 19
3swp_D	3e-17	15	139	18	146	NAC domain-containing protein 19
4dul_A	3e-17	15	139	15	143	NAC domain-containing protein 19
4dul_B	3e-17	15	139	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00120947001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974765	0.0	KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022574563.1	1e-139	NAC domain-containing protein 41-like
TrEMBL	A0A397XIR7	1e-137	A0A397XIR7_BRACM; Uncharacterized protein
STRING	Bra035712.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14666	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50820.1	3e-79	NAC domain containing protein 97

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]