PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121030001
Common NameGSBRNA2T00121030001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 239aa    MW: 27095.8 Da    PI: 4.5508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-15681461398
                          TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++  ++p +f+++h + k++s++l+l++  s rsWev+l  ++++    +++GWk+F   +g++  D++ F++dg++ f  +v+ f 
  GSBRNA2T00121030001  68 KNTATIPDSFISNHVKGKTQSTKLKLTSdVSDRSWEVEL--DGQR----FARGWKQFSVHHGVRNDDVLSFRHDGDMVF--HVTPFG 146
                          56689*********66678999****998999*******..8888....9************************99999..777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.6E-1456148IPR003340B3 DNA binding domain
PROSITE profilePS5086311.70256148IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-1465148IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1667148IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-968140IPR003340B3 DNA binding domain
CDDcd100171.17E-1072145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSSLMELSSQ LFHQILDESL LVTFVLFTVK SNVHVDKIYR PQYLLPSTNQ IRFACCQRLI  60
KSGLIVTKNT ATIPDSFISN HVKGKTQSTK LKLTSDVSDR SWEVELDGQR FARGWKQFSV  120
HHGVRNDDVL SFRHDGDMVF HVTPFGRSFS YQIQFISSTS EDENKDDEHN IFDDDVYDEE  180
EEHADAGNDD DDDGDSTSEE ELFPSSKKKA ITETETSLED SYLVAHVTSS NLGRNQMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121030001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126756.11e-113PREDICTED: putative B3 domain-containing protein REM4 isoform X1
RefseqXP_009126765.11e-113PREDICTED: putative B3 domain-containing protein REM4 isoform X2
RefseqXP_009126773.11e-113PREDICTED: putative B3 domain-containing protein REM4 isoform X3
SwissprotQ9SB793e-42REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A3P5Z2531e-112A0A3P5Z253_BRACM; Uncharacterized protein
TrEMBLM4D4841e-112M4D484_BRARP; Uncharacterized protein
STRINGBra011288.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.16e-43B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]