PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121167001
Common NameGSBRNA2T00121167001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 314aa    MW: 34960.6 Da    PI: 4.6252
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121167001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.5e-18204238135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  GSBRNA2T00121167001 204 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 238
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-981294IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.438198234IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-17198248IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-15200262No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14202236IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.32E-15203250No hitNo description
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15204238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQQQQQQLT PELFLVAGNS DSFVVDDLLD FSNENGQPDD GLEPFPDSST ISAGTLADSS  60
NSSSSLYTDG SVFSDDLCVP CEDLAELEWL SNFVEESFSK EDQDKLQLLS GLQKPQTTGL  120
TQTKPEPEPE PELDQIFIST DTDDSNVSVP AKARSKRPRS AASTWASRLL AGSDESYPKK  180
KQLRVKEHDG SAGELEGEGG ERRCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  240
EYRPASSPTF VMTRHSNSHR KVMELRRQKE MRDEHLMSQL RCENLVMDIR SNGEEFLISN  300
NNNNHVAPDF RHF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121167001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125288.10.0PREDICTED: GATA transcription factor 9
RefseqXP_013666624.10.0GATA transcription factor 9-like
SwissprotO826321e-164GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A3P5ZMC20.0A0A3P5ZMC2_BRACM; Uncharacterized protein
STRINGBra011393.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-134GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]