PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121181001
Common NameGSBRNA2T00121181001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 223aa    MW: 26169.4 Da    PI: 10.7825
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121181001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.5e-091351731854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  GSBRNA2T00121181001 135 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 173
                          6887779******************************98 PP
2BELL91.77e-301280372
                 BELL  3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                          +l++kk++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al+++S+ +++L+++i+++i
  GSBRNA2T00121181001 12 GALEAKKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTVSFLYKNLRERISKKI 80
                         6899***************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-8178IPR006563POX domain
PfamPF075262.5E-201177IPR006563POX domain
PROSITE profilePS5007110.981114177IPR001356Homeobox domain
CDDcd000867.74E-9117178No hitNo description
SMARTSM003891.1E-4117181IPR001356Homeobox domain
SuperFamilySSF466892.31E-15118186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25120183IPR009057Homeodomain-like
PfamPF059205.3E-15134173IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLLFFSRNRV RGALEAKKTH LLDLLQMVDD RYSHCVDEIH TVVSAFHAAT ELDPQLHTRF  60
ALQTVSFLYK NLRERISKKI LMMGTVLERG KEKSQEDSIF HQHCLLQQLK RKNHQIWRPQ  120
RGLPEKSVSV LRTWMFQNFL HPYPKDSEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE  180
DMYAEMNKRK LSNTPLQGGN GGSFIRVPKS VMMSQERDKI RE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-14123180562Homeobox protein Meis2
3k2a_B3e-14123180562Homeobox protein Meis2
4xrm_A3e-14123180562Homeobox protein Meis2
4xrm_B3e-14123180562Homeobox protein Meis2
5bng_A3e-14123180158Homeobox protein Meis2
5bng_B3e-14123180158Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121181001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125187.11e-155PREDICTED: homeobox protein ATH1
RefseqXP_009125194.11e-155PREDICTED: homeobox protein ATH1
RefseqXP_022551501.11e-155homeobox protein ATH1-like
SwissprotP487311e-132ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A3P5ZMB21e-154A0A3P5ZMB2_BRACM; Uncharacterized protein
TrEMBLM4D4J91e-154M4D4J9_BRARP; Uncharacterized protein
STRINGBra011403.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-134homeobox gene 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]