PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121268001

Common Name

GSBNAPT00096233001, GSBRNA2T00121268001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 348aa MW: 38286 Da PI: 4.7703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121268001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	277	317	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00121268001 277 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 317 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-14	268	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	272	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.29E-12	276	321	No hit	No description
Pfam	PF00010	1.3E-7	277	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSHGSNHN 60 HLSLMPEASS FGFSGESSSY SVADSRYYTV VPPTVEETNN GSLGFGMEDA TVNTNSYLVG 120 EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DYHRSLAGSK KRSRATSTDK 180 NKRSKVGKRG QKGIEMTCDN NNRGEEEEGE KVKRRKCGAM MSRQNSSTTF CSEEESQCPS 240 QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV 300 DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSHGSNHN  60
HLSLMPEASS FGFSGESSSY SVADSRYYTV VPPTVEETNN GSLGFGMEDA TVNTNSYLVG  120
EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DYHRSLAGSK KRSRATSTDK  180
NKRSKVGKRG QKGIEMTCDN NNRGEEEEGE KVKRRKCGAM MSRQNSSTTF CSEEESQCPS  240
QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV  300
DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121268001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC206509	0.0	KC206509.1 Brassica napus clone BAC CZ7N2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651457.1	0.0	transcription factor bHLH85-like
Swissprot	Q84WK0	0.0	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A068F476	0.0	A0A068F476_BRANA; Root hair defective 6-like protein 2
STRING	Bra011476.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-170	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Lu YH, et al. A dominant point mutation in a RINGv E3 ubiquitin ligase homoeologous gene leads to cleistogamy in Brassica napus. Plant Cell, 2012. 24(12): p. 4875-91 [PMID:23277363] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]