PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121417001

Common Name

GSBRNA2T00121417001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 253aa MW: 26631.4 Da PI: 4.3931

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121417001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	148	169	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ Cg+sF ++ H+r+H GSBRNA2T00121417001 148 KCNVCGRSFLSWKAVFGHLRSH 169 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.97E-5	144	171	No hit	No description
PROSITE profile	PS50157	8.663	147	169	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	149	169	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MSDPEKTKVN TEEKINENSD ESDYLWSDEE EEGEMREIVL ALPALSLSDA DEITRQKAVA 60 AADLLVAAAQ EAAVTKGNMD QQGFGGSGET AKKEKSRRPR TVMLDDLADV AGASGSKATV 120 SAGEEEPAKK PKKKGSPKLI NPPEGPPKCN VCGRSFLSWK AVFGHLRSHR DRGYSGFLPP 180 PTFNAAVKAS GGDVAASCGD GGLGLGTGGL NIDLNVDPID EVEECGTGST PKFDLNRSPP 240 QDEEDAKEDK AE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.3128	0.0	bud\| flower\| microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121417001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151053.1	0.0	PREDICTED: uncharacterized protein LOC103874360
TrEMBL	A0A3P5ZMM3	0.0	A0A3P5ZMM3_BRACM; Uncharacterized protein
STRING	Bra011631.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	6e-47	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]