PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121507001
Common NameGSBRNA2T00121507001, LOC106426645, LOC106441556
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 304aa    MW: 33094.9 Da    PI: 8.6124
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121507001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822208.32.1e-64101432145
               DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                          ++gr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+         ++ s++
  GSBRNA2T00121507001  10 SAGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPT--------PTNFSTN 91 
                          79*************************************************************************........6778888 PP

               DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                          ss+q s++ssa++sp++sy+ sp sssfpsps++d+++++    llp+l++ ++
  GSBRNA2T00121507001  92 SSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDQNPSS--YLLLPFLHNIAS 143
                          88889999*****************************987..899999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-5811128IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAAGGGGSSS AGRTPTWKER ENNKKRERRR RAITAKIYSG LRAQGNYKLP KHCDNNEVLK  60
ALCLEAGWIV EDDGTTYRKG FKPTPTNFST NSSIQPSPQS SAFPSPAPSY HGSPVSSSFP  120
SPSRYDQNPS SYLLLPFLHN IASSIPSNLP PLRISNSAPV TPPLSSPTSR GSKRKLITEQ  180
LPNGGSLLRH PLFAISAPSS PTRRGGHQTP PTIPECDESE EDSVEDSGRW ISFQSTAPPS  240
PTFNLVQQTS MEIDMKRPEW GMNARGSEFE FENGTVKPWE GEMIHEVGVE DLELTLGGTK  300
TRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-261393372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-261393372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-261393372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-261393372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.116130.0leaf| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121507001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142040.10.0PREDICTED: BES1/BZR1 homolog protein 2
RefseqXP_013723093.10.0BES1/BZR1 homolog protein 2
RefseqXP_013738845.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-171BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A398APS20.0A0A398APS2_BRACM; Uncharacterized protein
TrEMBLM4D5E90.0M4D5E9_BRARP; Uncharacterized protein
STRINGBra011706.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.17e-84BES1/BZR1 homolog 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]