PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121626001

Common Name

GSBRNA2T00121626001, LOC106436165, LOC106439593

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 243aa MW: 26954.2 Da PI: 9.7192

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121626001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.9e-37	38	97	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprCds ntkfCyynnyslsqPr++Ck+CrryWt+GG+lrnvP+Gg++r+++k s GSBRNA2T00121626001 38 QPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGSLRNVPIGGSTRNKNKPS 97 56789*************************************************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	35	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	40	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.174	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MMTSSHQSHT TSFNPRRIKA KAKPPHQISR MGPSPAAQPV LKCPRCDSVN TKFCYYNNYS 60 LSQPRHYCKN CRRYWTRGGS LRNVPIGGST RNKNKPSSLQ VISSPPPIVA SLSSHELVDG 120 FRMNRAMIDP PATAFPGGFS GYMFSLDPTY NLASSSIESL SSLNQDLHQK LQQQRLFTSM 180 FQQDSPPVMF HNVELLPPST ATTEWAFDRS AIGGATSGSN ENNGEREGNL ESWYYNPNNS 240 MP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14751	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed at the base of all organs of the flower, especially in the abscission zone (AZ) of petals, stamens and sepals. Expressed at low levels in sepals, filaments, stigmatic papillae, tips of young siliques, and at the base of pedicels and leaf trichomes. {ECO:0000269\|PubMed:20466844}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Involved in the negative regulation of floral organ abscission by binding to the typical DOF 5'-AAAG-3' sequences in the promoter of ADPG2/PGAZAT, and by down-regulating its expression. ADPG2/PGAZAT is an abscission-related and cell wall hydrolyzing polygalacturonase. May act through the interaction with ZFP2, an abscission-related transcription factor. {ECO:0000269\|PubMed:20466844}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121626001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228613	2e-43	AK228613.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL15-43-I22.
GenBank	AL035538	2e-43	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161592	2e-43	AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBank	BT005767	2e-43	BT005767.1 Arabidopsis thaliana clone RAFL15-43-I22 (R20996) putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBank	BT006092	2e-43	BT006092.1 Arabidopsis thaliana clone U20996 putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBank	CP002687	2e-43	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013732610.1	0.0	dof zinc finger protein DOF4.7-like
Refseq	XP_013736532.1	0.0	dof zinc finger protein DOF4.7-like
Swissprot	Q84K52	1e-113	DOF47_ARATH; Dof zinc finger protein DOF4.7
TrEMBL	A0A398APH9	1e-178	A0A398APH9_BRACM; Uncharacterized protein
STRING	Bra011800.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15286	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	8e-97	DNA binding with one finger 4.7

Link Out ? help Back to Top
Entrez Gene	106436165 \| 106439593

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]