PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121806001
Common NameGSBRNA2T00121806001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 239aa    MW: 26132.1 Da    PI: 10.0646
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121806001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-132.81.2e-1019122386118
                 CG-1  86 ahseenptfqrrcywlLeeelekivlvhylevk 118
                          ah+e+n++f+r cyw+Le+el +iv+v+ylevk
  GSBRNA2T00121806001 191 AHGEDNENFERLCYWMLEQELMHIVFVQYLEVK 223
                          8*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF038591.1E-6190222IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSFTGKSNSE KPQRVEGDSF PGPINPIGDP HSKQAKVEAS FSSGLTKLKA DTFPGPIKPI  60
GDPHSKQAKA VASISSGLTK LKDDSFPGPI KPIGTPDSKN CKGTINHNTK TGFSSGVRGK  120
AAVSSAVKGK AIVSAKVMAF KDVKYGLHDG ELRFRLIHFW EARNVVTKVL LGGSSDILGK  180
MGTTGGRRKM AHGEDNENFE RLCYWMLEQE LMHIVFVQYL EVKVKQFKFC EWLHFCEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121806001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509140.11e-114PREDICTED: uncharacterized protein LOC103835324
TrEMBLA0A3P5Y9W61e-176A0A3P5Y9W6_BRACM; Uncharacterized protein
STRINGBra010875.1-P1e-163(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.23e-15Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]