PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121923001
Common NameGSBRNA2T00121923001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 577aa    MW: 65287.4 Da    PI: 6.6717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-131163248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                         + W+t E++ll++av+++G ++W+++a+++        ++t+ +c++++++++
  GSBRNA2T00121923001 11 QTWSTREELLLACAVHRHGVDSWDSVAAEIHkqnsssRTLTASECRHKYNDLK 63
                         78************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.899563IPR017877Myb-like domain
SuperFamilySSF466891.17E-6866IPR009057Homeodomain-like
SMARTSM007174.4E-9965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-6964IPR009057Homeodomain-like
PfamPF002496.2E-131163IPR001005SANT/Myb domain
CDDcd001671.04E-61263No hitNo description
SMARTSM002979.9E-16244353IPR001487Bromodomain
CDDcd043693.27E-18251348No hitNo description
SuperFamilySSF473703.79E-18254359IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.7E-16256372IPR001487Bromodomain
PfamPF004392.8E-11258338IPR001487Bromodomain
PROSITE profilePS5001412.678263334IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAKPENNETH QTWSTREELL LACAVHRHGV DSWDSVAAEI HKQNSSSRTL TASECRHKYN  60
DLKRRFSPEG ETVSEISWWL EELRKLRVDE LRREVERYDQ SISSLQMKVK RLEDEREKEE  120
AEKVTESPDL VKITETVNNS DVPVIEPNRE IDESIEEIAN RIGGDEIETD EKPVREDSGR  180
GSCGSVGKDS ERGDSVREGN DDSPELKLEE EVKETSDVQS SASLPRKEES VGHDQPDNED  240
QSLAVNKTLV KSRPLIEFIE MLCSHPIGSH FSRRLESQET PEYERIIRQH IDFDLIRTRV  300
DEGYYERSKT KFHRDLLLLI NNAKVFYGER SPESNSATQL HELIKKQMTT LKTSNQTSPP  360
KDEPLVTSTK EEPTLLSLKT KVSVSVKACR KRSSLAVRSS TEPVKKKTNI VPTTDEDENE  420
KKQVSETEEE DETTTDKDEE PIVSKKTPRG RTTTSSAKKI GTRNVVKTSL DDEQKKSDQE  480
KKGKTTANAV SKKQSAASFL KRMKGAETVV ETVKDDSSSG KKGAEQRRSN TKHEKAVAGQ  540
KRTTPAKRNT SAVSKREASE KEEGSSTRPK KRTRRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121923001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663540.10.0desmoplakin-like isoform X2
TrEMBLA0A397Y2D10.0A0A397Y2D1_BRACM; Uncharacterized protein
STRINGBra007371.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-180DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]