PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121938001
Common NameGSBRNA2T00121938001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 357aa    MW: 38682.2 Da    PI: 6.237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121938001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09188235455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  GSBRNA2T00121938001 188 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 235
                          8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-9182239No hitNo description
SuperFamilySSF474592.49E-15182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-15184252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDLTGAFGAR SAAVGPCREP PGLESLHLGG GDGGFTALLE LPPTQAVELL HFTDPSPSSS  60
QAAVAGVGLD VSPPPPPLHA YGALTFPSNA ALMERAARFS VMANEQQQNG NVSGETTTTS  120
SVPSNSDRVK TEPGETDSSQ LENNRCGKRK ELDKKVKGST KKKSKSSEEN EKLPYVHVRA  180
RRGQATDSHS LAERARREKI NARMKLLQEL VPGCDKIQGT ALVLDEIINH VQSLQRQVEM  240
LSMRLAAVNP RVDFNLDTLL ASENCSLIDG SFNGTAMQLA WPHQVTETEQ SFHHRQLQLQ  300
QPPQPQQWPY DGLNQPAWGR EDDQGHGNEH NSLMAVSENL VVGSASLHPN QVKMEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.280450.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121938001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116480.10.0PREDICTED: transcription factor bHLH60
RefseqXP_013663548.10.0transcription factor bHLH60
RefseqXP_022569703.10.0transcription factor bHLH60-like
SwissprotQ3EAI11e-174BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A397Y3N30.0A0A397Y3N3_BRACM; Uncharacterized protein
STRINGBra007358.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-175bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]