PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121976001
Common NameGSBRNA2T00121976001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 219aa    MW: 24384.8 Da    PI: 8.2161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121976001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06190212223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp+C++ F+++ +L +Hi + H
  GSBRNA2T00121976001 190 VCPKCSRGFRDPVDLLKHIDKdH 212
                          7******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.77E-14649No hitNo description
PROSITE profilePS510397.931059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.2E-121150IPR000058Zinc finger, AN1-type
SMARTSM001541.2E-51352IPR000058Zinc finger, AN1-type
PfamPF014286.2E-151349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.0E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.06E-1093148No hitNo description
PROSITE profilePS510397.88998145IPR000058Zinc finger, AN1-type
SMARTSM001540.02101142IPR000058Zinc finger, AN1-type
PfamPF014287.0E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.746189217IPR007087Zinc finger, C2H2
PROSITE patternPS000280191213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDDCKQ IDFLPFTCDR CTQVFCLDHR SYNNHNCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVSSNCDPS SYEKTVKKKK CPVPRCRELL TFSNTIRCRD  120
CSVEHCLKHR FGPDHGCAGP KKPESRWSTL LASAEASISR LGTDLSQKLQ FANGNSEKMP  180
EKNGKVTVDV CPKCSRGFRD PVDLLKHIDK DHHGTSKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.255931e-149flower
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121976001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894570.0AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546911.11e-161zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
SwissprotQ9SCM41e-133SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A397Y8R71e-159A0A397Y8R7_BRACM; Uncharacterized protein
STRINGBo8g091910.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]