PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122183001
Common NameGSBRNA2T00122183001, LOC106419985
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 691aa    MW: 78850.6 Da    PI: 5.8824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122183001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3497.5e-1073116872373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+ +ssgd+ +a+ lL+++++++sp gd+ qRla +ft+AL+arl++s+  + ++   + ++++++ ++ l+ +k+f  +sP+
  GSBRNA2T00122183001 311 RTLLTLCAQSISSGDKLAADDLLNQIKKQCSPLGDASQRLAYFFTKALEARLQGSSGVMIQSYyDSITSKKRTAAQILKTYKAFLSASPF 400
                          6799**************************************************55555555427777777779**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ ++  N++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiTgv+ p++g   +e++e tg+rL+++++++gvpfe+
  GSBRNA2T00122183001 401 MTLIYFFSNKMILDASKDASVLHIIDFGILYGFQWPMFIQYISKSKIGPRKLRITGVELPQNGfrPTEKIEDTGRRLREYCKRFGVPFEY 490
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          n++++k++e+++lee++++p+E+laVn+vl+l++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F++rf eal +ys+l
  GSBRNA2T00122183001 491 NAIASKNWETIRLEEFKIRPNEVLAVNSVLRLKNLRDVTPGEEDcPRDGFLKLIRDMKPDVFLSSTINGSFNAPFFATRFKEALFHYSSL 580
                          ***99*******************************9999999999******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd++ ++l++e+ er+  E e++gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++++ +++ +  +++ +  + + ++e+s+
  GSBRNA2T00122183001 581 FDMFGSTLSKENPERMHFEGEFFGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVETELVESFREKMKRWGyHKDFVLDEDSN 670
                          ****************************************************************************999999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          ++++gWk+r L+s S+W
  GSBRNA2T00122183001 671 WFLQGWKGRILFSSSCW 687
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.541284667IPR005202Transcription factor GRAS
PfamPF035142.6E-104311687IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MMESNFYRIV NGHEYYDVSF LPNQIPDLGF GVPSSSDFDL RLDHHHHHQQ PSYWIPSTQQ  60
DQDSPPGADE IDSENTLLKY VNQLLMEETL SENQSMSYDD ALALRQTEEM LQQVINDSLA  120
QSSNSITSST SSGSSSGGEY LNSNSNSCVR IETEANSTES EALSDDHPHH ILGSNMLSGY  180
GQPANEILVR SMFSDADSVN QFKRGLEEAS KFLPNTDQWI FNPQHEVISV KDEKGFSRVR  240
KHHHQEPEEE EARRSKQSAV NVDDGNISEL FDKVLLLDNQ LDPQIKEETN NVSSKKEGGR  300
GKKKSKAVDF RTLLTLCAQS ISSGDKLAAD DLLNQIKKQC SPLGDASQRL AYFFTKALEA  360
RLQGSSGVMI QSYYDSITSK KRTAAQILKT YKAFLSASPF MTLIYFFSNK MILDASKDAS  420
VLHIIDFGIL YGFQWPMFIQ YISKSKIGPR KLRITGVELP QNGFRPTEKI EDTGRRLREY  480
CKRFGVPFEY NAIASKNWET IRLEEFKIRP NEVLAVNSVL RLKNLRDVTP GEEDCPRDGF  540
LKLIRDMKPD VFLSSTINGS FNAPFFATRF KEALFHYSSL FDMFGSTLSK ENPERMHFEG  600
EFFGREVMNV IACEGVDRVE RPETYKQWQV RMMRAGFKQK PVETELVESF REKMKRWGYH  660
KDFVLDEDSN WFLQGWKGRI LFSSSCWVPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4531768711374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122183001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716273.10.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLM4ES020.0M4ES02_BRARP; Uncharacterized protein
STRINGBra031580.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]