PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00122214001

Common Name

GSBRNA2T00122214001, LOC106420010

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 182aa MW: 20346.9 Da PI: 9.6277

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00122214001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.3	2.2e-15	76	163	12	99
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++++ ++fl d vp++ GSBRNA2T00122214001 76 GVEDAKMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSGEAYESSVQDKKKFIHYKHLSSVVSNSERYEFLADCVPEK 163 56789999*****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	8.2E-22	84	147	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.8E-24	85	162	IPR009072	Histone-fold
SuperFamily	SSF47113	2.26E-18	94	163	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVSSKKPNQE KKPKSDGVNK AAARNARSSG SKSKKKSNVQ ANVKKEPEVH EISESSSSDS 60 VEETRRDEPM KSNGGGVEDA KMIRFPMNRI RRIMRSDNSA PQIMQDAVFL VNKATELFIE 120 RFSGEAYESS VQDKKKFIHY KHLSSVVSNS ERYEFLADCV PEKVKAEVAL EEWEKSMTDA 180 G*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15749	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00122214001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC797146	1e-154	KC797146.1 Brassica napus transcription factor subunit NF-YC10A (NF-YC10A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716301.1	1e-130	chromatin accessibility complex protein 1
TrEMBL	A0A397Y7S3	1e-128	A0A397Y7S3_BRACM; Uncharacterized protein
STRING	Bra031606.1-P	1e-108	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-66	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Entrez Gene	106420010

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]