PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00122894001

Common Name

GSBRNA2T00122894001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 597aa MW: 66678.8 Da PI: 10.0384

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00122894001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5e-07	494	543	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ GSBRNA2T00122894001 494 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 543 6789999*****************9988889************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.735	489	548	IPR017930	Myb domain
SMART	SM00717	3.7E-6	493	546	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	494	544	IPR009057	Homeodomain-like
CDD	cd11660	1.37E-15	495	545	No hit	No description
SuperFamily	SSF46689	2.96E-15	495	576	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MVLQRRLDHG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS 60 SNNAIGDTNE EDQCAVKTKP HQTVVEEINC DHIHDNNAER RFFVSEILPK THRSPSPPKD 120 FHFGSTSGIT SDSSEKLGTQ GLGQSVCFRS ETNDKISMHG RLINDCEPEL SRDIIAENKH 180 HIGSGFKKPV PPPVCSDDID LLNDDGENFS ARYTTKTFRS TLRIGDRRIK KVLASKYCKL 240 SSKQKETTVT NSDMDLKPNY YNKKHCLKSL RSERRYPIKK RRYFDGYTAS QSEETPKRAF 300 MSTIACQKQP ALQSRDSHVK LGIKSFKVPE LFIEIPETAT VGSLKRAVLE AVTTILEGGL 360 RIGVLVHGKK VRDDSKMLLQ NGISLDTLSD TLGFCLEPNP PHSTKPLSPE DSDCLRPFNV 420 PHTLTRCLAS QGKHAKPSNS VESDLDSKPS APNRAKPVYS RALIPVAPPL HAQALNVVPP 480 RKPKRSEVAQ RRIRRPFSVA EVEVLVQAVE RLGTGRWRDV KLRAFDNAKH RTYVDLKDKW 540 KTLVHTARIS PQQRRGEPVP QELLDRVLMA HAYWSQQQGK QQLLEGPQKL ETSLGL*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MVLQRRLDHG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS  60
SNNAIGDTNE EDQCAVKTKP HQTVVEEINC DHIHDNNAER RFFVSEILPK THRSPSPPKD  120
FHFGSTSGIT SDSSEKLGTQ GLGQSVCFRS ETNDKISMHG RLINDCEPEL SRDIIAENKH  180
HIGSGFKKPV PPPVCSDDID LLNDDGENFS ARYTTKTFRS TLRIGDRRIK KVLASKYCKL  240
SSKQKETTVT NSDMDLKPNY YNKKHCLKSL RSERRYPIKK RRYFDGYTAS QSEETPKRAF  300
MSTIACQKQP ALQSRDSHVK LGIKSFKVPE LFIEIPETAT VGSLKRAVLE AVTTILEGGL  360
RIGVLVHGKK VRDDSKMLLQ NGISLDTLSD TLGFCLEPNP PHSTKPLSPE DSDCLRPFNV  420
PHTLTRCLAS QGKHAKPSNS VESDLDSKPS APNRAKPVYS RALIPVAPPL HAQALNVVPP  480
RKPKRSEVAQ RRIRRPFSVA EVEVLVQAVE RLGTGRWRDV KLRAFDNAKH RTYVDLKDKW  540
KTLVHTARIS PQQRRGEPVP QELLDRVLMA HAYWSQQQGK QQLLEGPQKL ETSLGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	1e-56	481	583	4	106	Telomere binding protein TBP1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269\|PubMed:15364931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00122894001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519535	0.0	AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118956.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X3
Refseq	XP_022548834.1	0.0	telomere repeat-binding protein 5-like isoform X3
Swissprot	Q6R0E3	0.0	TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBL	A0A397XID8	0.0	A0A397XID8_BRACM; Uncharacterized protein
STRING	Bra015585.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3240	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	0.0	TRF-like 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]