PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00122908001

Common Name

GSBRNA2T00122908001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 420aa MW: 45921.2 Da PI: 9.9339

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00122908001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	179	202	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ Cg++F+ ++L+ H+ + H GSBRNA2T00122908001 179 FACTQCGEVFPKLETLEIHQAVrH 202 78******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.93	179	207	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	181	202	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.63E-19	204	415	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.3E-12	209	416	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MAPLPFLPAQ TKSQTRLSSD SKKKNGNKKT STQPPQTQTL KQTQKLKQKT VSSSSSSSWS 60 QIKNLLSCKQ IEGPRVHDPS KITLSSCGSS LCKFSDVIYG NARVIHRSDH SPESSNLGQD 120 GGLLIRKPAT RGSSSTVRSN GCGAYTSSSK AMHFRKLSGC YECHMIVDPS RYPISPRIFA 180 CTQCGEVFPK LETLEIHQAV RHAVSELGQE DSGRNIVDII FKSSWLRKDG PLYKIERILK 240 VHNTHRTIQR FEDCRDAVKS HAHASTRKEP RSAADGNELL RFHCTTVSCS LGSRGSTSLC 300 SNIPGCRVCT IIRHGFHAKT LRLGSGSNEI KGVRTTASSG RAHDALRCFD QRRAMLVCRV 360 IAGRVRRGQS DAPEDENDSC SYDSVAGAAG IYTNVDDLAV LNPKAILPCF VVIYKVSEP*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MAPLPFLPAQ TKSQTRLSSD SKKKNGNKKT STQPPQTQTL KQTQKLKQKT VSSSSSSSWS  60
QIKNLLSCKQ IEGPRVHDPS KITLSSCGSS LCKFSDVIYG NARVIHRSDH SPESSNLGQD  120
GGLLIRKPAT RGSSSTVRSN GCGAYTSSSK AMHFRKLSGC YECHMIVDPS RYPISPRIFA  180
CTQCGEVFPK LETLEIHQAV RHAVSELGQE DSGRNIVDII FKSSWLRKDG PLYKIERILK  240
VHNTHRTIQR FEDCRDAVKS HAHASTRKEP RSAADGNELL RFHCTTVSCS LGSRGSTSLC  300
SNIPGCRVCT IIRHGFHAKT LRLGSGSNEI KGVRTTASSG RAHDALRCFD QRRAMLVCRV  360
IAGRVRRGQS DAPEDENDSC SYDSVAGAAG IYTNVDDLAV LNPKAILPCF VVIYKVSEP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00122908001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118945.1	0.0	PREDICTED: uncharacterized protein LOC103843923
TrEMBL	M4DGH4	0.0	M4DGH4_BRARP; Uncharacterized protein
STRING	Bra015598.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-156	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]