PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122982001
Common NameGSBRNA2T00122982001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 330aa    MW: 37415.3 Da    PI: 8.9389
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122982001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.6e-36321242103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k
  GSBRNA2T00122982001  32 FLTKTYQLVDDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEK 112
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  GSBRNA2T00122982001 113 HLLCEIHRRKTS 124
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3824116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6028121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3429121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3232121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAKMLENSYG YGNGERIQLM VEGQGKAVPA PFLTKTYQLV DDPATDHVVS WGDDDTTFIV  60
WRPPEFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEFFKRG EKHLLCEIHR  120
RKTSQMIPNQ HSPFITHHPP PQIPFSGGAS FFPLPPRADA SAAMDDHYWC ESPSPRPRVV  180
PTTADAQVAV LTEDNERLRR TNTVLMSELA HMKKLYNDII YFVQNHVKPV APSNSFLQKQ  240
QQPPPPPPPI DYYNNATVPN HSPPTSQSSI TLLEDDTNPE SITRKTKLFG VSLASSKKRS  300
HHFSDQSSKT RLVLDKSDLG LNLMTASTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222812417123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122982001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119797.10.0PREDICTED: heat stress transcription factor B-4-like
RefseqXP_013640015.10.0heat stress transcription factor B-4-like
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A397XIQ10.0A0A397XIQ1_BRACM; Uncharacterized protein
STRINGBra040634.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.10.0heat shock transcription factor B4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]