PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123141001
Common NameGSBRNA2T00123141001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 360aa    MW: 39751.8 Da    PI: 9.1337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123141001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15178222352
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ 
  GSBRNA2T00123141001 178 EMHNISERRRREKINEKMKALQELIPRC-----NKTDKASTLEDAIEYMM 222
                          58*************************8.....6**************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.117175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-13178222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-15178221No hitNo description
Gene3DG3DSA:4.10.280.103.6E-17179222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-13181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASWLNHHPR PGEDELNYHL FYSGLVSTPF THPQGSRPMG QVIAGRRAES FFNLSRVRGN  60
VHTGGRVEAA AAQWVKDSTQ VGSSATPTYS APESCLTPAT FTGGVAQTFA VPSLSRKVVE  120
TVCEIAGPSS SRVSKTETEP FQMQPATADE RKRKEREEAE TGEEARGSTS RKRSRAAEMH  180
NISERRRREK INEKMKALQE LIPRCNKTDK ASTLEDAIEY MMSTGGGCMM TMMYAPNMQR  240
FIAPSAMGMD RPPFIPFPGM ALPRQAHMEG LGPPYPPPRY PFPNVQAFDP NQSQFPGYMN  300
PYSQFVGLQQ MQQPPPPTQL QNQSLVSFSQ ASSSKEPEDQ DNKPIGKRGR ARGVSCEMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170187RKRSRAAEMHNISERRRR
2183188ERRRRE
3184189RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123141001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775861e-48AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129259.10.0PREDICTED: putative transcription factor bHLH056
SwissprotQ9SVU71e-106BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A398ARK70.0A0A398ARK7_BRACM; Uncharacterized protein (Fragment)
STRINGBo1g017080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.15e-79bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]