PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123148001
Common NameGSBRNA2T00123148001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 456aa    MW: 50146.3 Da    PI: 5.5083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123148001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.5e-17273320355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  GSBRNA2T00123148001 273 EMHNISERRRREKINEKLKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 320
                          58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20268330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.52270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-17273324No hitNo description
PfamPF000101.8E-14273320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-22274329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSFWATLRGG EDDIVELLWK SGQVVESSQE QRPPVPPSIL RGSGSGGGEE SAPLPSPPPL  60
PSHQQQLSDD QNLFIGEDEM ASWLLHHHPL REEGDFHSHL FYSGVASASL TPPPPPAAGS  120
AIYTPTAAER PMGQAIASRR AESFFNFWRL RENIHTGGRV EAAAAPWVPV VKDSTQVGSS  180
ATPSSSAATA TSGVLQTFAV PSLGQRGVDT VCDIPRPSSS VVSKTETELF RIETEAGDDE  240
RKRKEREEPS DDEEETGEEA RGSTSRKRSR AAEMHNISER RRREKINEKL KALQELIPRC  300
NKTDKASMLE DAIEYVKSLQ MQIQMMSMRG GGMMPMMYTP NMQRFMPSSA MGMMGMNRPP  360
FIPFPGMALP RPAHMEGLGP PYPPPRYPFP NVQAFDPNQP QFPGYMNPYS QFVGLQQMQQ  420
PPPPTQLQNQ SSSQLSFSQA SSSKEPEDQD NKPKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265282RKRSRAAEMHNISERRRR
2278283ERRRRE
3279284RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123148001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670972.10.0transcription factor bHLH119-like isoform X2
SwissprotQ9SVU71e-125BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A3N6R8000.0A0A3N6R800_BRACR; Uncharacterized protein
STRINGBra011061.1-P0.0(Brassica rapa)
STRINGBo1g017100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28811.11e-68bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]