PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123168001
Common NameGSBRNA2T00123168001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 610aa    MW: 68042.6 Da    PI: 9.8729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123168001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-111365147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                         ++ W t+E++ll++av+++G+++W +++++++        +t+  c++++ ++
  GSBRNA2T00123168001 13 KQTWGTWEELLLACAVHRHGTESWLSVSAEIQkrtrnlSSLTASACRHKYSDL 65
                         789*****************************988888888888999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-51268IPR009057Homeodomain-like
SMARTSM007171.6E-51268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-41349IPR009057Homeodomain-like
PfamPF002492.6E-111365IPR001005SANT/Myb domain
CDDcd001679.26E-51562No hitNo description
SMARTSM002975.2E-16231340IPR001487Bromodomain
SuperFamilySSF473703.14E-16237342IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.0E-14243349IPR001487Bromodomain
PfamPF004399.1E-11246325IPR001487Bromodomain
CDDcd043693.19E-15248335No hitNo description
PROSITE profilePS5001411.326250321IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAKPENDDVF PEKQTWGTWE ELLLACAVHR HGTESWLSVS AEIQKRTRNL SSLTASACRH  60
KYSDLKRRFT QEMTSPESEI SSVPWLEKLR RIRVDELRRE VERYDLSISS LRSKVKRLEE  120
ETSSDLDKNE LRRESDRDGG ELVPISPDPV DISSVNVKRE EEMAGGGEAK LAGDDSCRGS  180
CEKESGVNSE RVEPGRRNEL TQSEETSDVQ SSASLPRKRT SEIDKEDQSP SAKDFNLESQ  240
PSISFVEMLL SHPCGYFFSR RLETQETPEY GKIIRQHVDF EMIRKLDEEG LYKSSMTKLF  300
RDLLLLINNA KVFYHKGSSE FNSAEQLHQL VKKQMATTLQ RELPPPKEKS LELVSFKEAV  360
AVTSKPRISL PIVACGKRSS LASKPLLMIS PSGGDKKGKK TDQVVDDEKL VLLKDEETSG  420
KDDESLVLRK MVRGKTSTAK KVVARNVKNS GSSLNEVKTT DEEKKGNQSG SSKRKSVAGF  480
LKRMKGSGSS SSDTVVETLM PSSEQKKNNI RKADAKKRAT GENQTNEKAS PVKKKNNGRA  540
LKREAVPSPS SSPSPVVAKR SRESGEKKEA SSSPSSTRSK KRARSRLSCP NSYPHMHFES  600
TTIHSNSCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123168001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744975.10.0DNA repair protein complementing XP-C cells homolog isoform X2
RefseqXP_022574151.10.0DNA repair protein complementing XP-C cells homolog isoform X2
TrEMBLA0A397ZXF00.0A0A397ZXF0_BRACM; Uncharacterized protein
STRINGBra016893.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.10.0DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]