PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123419001
Common NameGSBRNA2T00123419001, LOC106347585
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 252aa    MW: 28319 Da    PI: 8.1409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-172572148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEde+lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
  GSBRNA2T00123419001 25 RGPWTAEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72
                         89******************************99************97 PP
2Myb_DNA-binding51.62.2e-1679123248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g  T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSBRNA2T00123419001  79 GGITPDEEDLIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123
                          667******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-221675IPR009057Homeodomain-like
PROSITE profilePS5129416.6312072IPR017930Myb domain
SuperFamilySSF466898.24E-3021119IPR009057Homeodomain-like
SMARTSM007171.2E-132474IPR001005SANT/Myb domain
PfamPF002493.1E-152572IPR001005SANT/Myb domain
CDDcd001671.58E-112772No hitNo description
PROSITE profilePS5129425.19773127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2576127IPR009057Homeodomain-like
SMARTSM007171.1E-1577125IPR001005SANT/Myb domain
PfamPF002494.3E-1579123IPR001005SANT/Myb domain
CDDcd001671.88E-1282123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTSSRGKKQV VKKMIPCCMK MGMKRGPWTA EEDEILVSFI KKEGEGRWRS LPKRAGLLRC  60
GKSCRLRWMN YLRPSVKRGG ITPDEEDLII RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN  120
THLRKKLLSE GIDPQTHKPL DAKNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAT  180
KITFSVFGGE DNEDFGFCYD DKFSSFLNAL INDDPFDSNI PLSQPFRTQD CTGEIVGTSS  240
SLEHGQRIED I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27231275108B-MYB
1h8a_C6e-272312725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123419001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013642609.10.0transcription repressor MYB5
SwissprotQ388501e-136MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A398AUG20.0A0A398AUG2_BRACM; Uncharacterized protein
STRINGBra039395.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-138myb domain protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]