PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123484001
Common NameGSBRNA2T00123484001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 372aa    MW: 42410.8 Da    PI: 5.8989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123484001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1341e-4151332128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgk 88 
                          p+GfrF+Pt +el+++yLk+kv +k+  ++e+i+e++i+ ++P+ Lp+  k+++++  wyfF++r+ + ++ +k ++r+t sg+Wkatg 
  GSBRNA2T00123484001   5 PVGFRFSPTGQELINHYLKNKVLDKPWLVDEAINEINICAHDPKFLPAlsKLDSKDLVWYFFCRREYHVSEkKKGTKRTTPSGFWKATGV 94 
                          89************************999999***************5347777778********9998862667888************ PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++ + kg ++g+kktLv+y+g++ +g  t Wvmhey++
  GSBRNA2T00123484001  95 DRKIRD-KGVEIGIKKTLVYYEGKSTNGAWTPWVMHEYHI 133
                          ******.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.9034151IPR003441NAC domain
SuperFamilySSF1019416.15E-464151IPR003441NAC domain
PfamPF023652.0E-255133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MKKKPVGFRF SPTGQELINH YLKNKVLDKP WLVDEAINEI NICAHDPKFL PALSKLDSKD  60
LVWYFFCRRE YHVSEKKKGT KRTTPSGFWK ATGVDRKIRD KGVEIGIKKT LVYYEGKSTN  120
GAWTPWVMHE YHITSLPPSQ RNYVICQVMY KGADGDSLYG NNSNELSHST MVSDLNTVRE  180
INTAPEVEQP TEEDFYMSWD DLANPLNEQD DPSLFNPDTF FNDDYCPYQR QPQAPCDDDY  240
INKLLSFNGG NYADVLGDLD ITMQEHRNDH RPTKALTGII VDCSSDNDAK SISATLILSN  300
FILFFESLSA SFYVNRVRSA YSYIQVVMIS DRLKVGRKTL RVQARADGDL ICSDLDVGGL  360
PEMDTSRRRF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-23515121168NAC domain-containing protein 19
3swm_B2e-23515121168NAC domain-containing protein 19
3swm_C2e-23515121168NAC domain-containing protein 19
3swm_D2e-23515121168NAC domain-containing protein 19
3swp_A2e-23515121168NAC domain-containing protein 19
3swp_B2e-23515121168NAC domain-containing protein 19
3swp_C2e-23515121168NAC domain-containing protein 19
3swp_D2e-23515121168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123484001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204390.0KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111374.20.0PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1261e-111NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A3P6DJY40.0A0A3P6DJY4_BRAOL; Uncharacterized protein
STRINGBra036326.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-114NAC domain containing protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]