PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123495001
Common NameGSBRNA2T00123495001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 311aa    MW: 34642.1 Da    PI: 6.0101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123495001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14108159155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++++ ++ Lr+l+P+      ++ + a+i+  A++YIk+L+
  GSBRNA2T00123495001 108 QRMTHIAVERNRRRQMKEHLNSLRSLMPPT---FLQRGDQASIVGGAIDYIKELE 159
                          79***************************9...89*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-12106163No hitNo description
SuperFamilySSF474596.28E-17107180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.72107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14108170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-12108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEGLMRFGGL EEQFSHISEN AINEKTPFLQ MLQCIEPEPN QILQSLLQSQ TLEPESCLTL  60
ETIKRDPGQE EDPVKDPKTE DGAEAKVKEK RKRKRTTAPK NNDEVESQRM THIAVERNRR  120
RQMKEHLNSL RSLMPPTFLQ RGDQASIVGG AIDYIKELEQ LLQSLEAEKQ SEGASENPKT  180
ASCSSSSSRA CTNSSVSSIS PASEDGFTAR FGGGETVEVE ATVIQNHVSL KVRCKRGRGQ  240
ILRAIISIEN LKLSILHLTI STSFDFVFYS FNLKIEDGCK VRSADEIATA VHQIFEQING  300
VMMWSNLSRA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108119RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.237970.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123495001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606234.10.0PREDICTED: transcription factor bHLH57
SwissprotQ9M1281e-161BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A0D3DZU50.0A0A0D3DZU5_BRAOL; Uncharacterized protein
STRINGBo9g004020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-131bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]