PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123958001
Common NameGSBRNA2T00123958001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 68aa    MW: 8166.46 Da    PI: 8.9578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123958001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.87e-132631176
                  NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76
                         +eelv++yLk+k++g+++el  +i+evd++k+ePw +      +++  y  ++r+++ya+++++n 
  GSBRNA2T00123958001  2 EEELVNCYLKRKINGQEIEL-AIIPEVDLCKCEPWMMG---PRRTRVHYVRCSRRTEYAQSRKQNN 63
                         79******************.88**************5...2244566888999999988777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.242167IPR003441NAC domain
SuperFamilySSF1019413.01E-10262IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MEEELVNCYL KRKINGQEIE LAIIPEVDLC KCEPWMMGPR RTRVHYVRCS RRTEYAQSRK  60
QNNNYKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123958001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P6B0J01e-42A0A3P6B0J0_BRAOL; Uncharacterized protein
STRINGBo3g070170.18e-23(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.18e-16NAC domain containing protein 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]