PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124135001
Common NameGSBRNA2T00124135001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 359aa    MW: 39660.3 Da    PI: 6.2148
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124135001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573123.87.8e-39146234297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +fqrlw+eeDei++LqG+idfk++tg sp+dd++a y+++kksisf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hdqk++ l
  GSBRNA2T00124135001 146 AFQRLWTEEDEIAVLQGMIDFKNDTGNSPYDDTNAYYDYIKKSISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQKSYRL 228
                          69**************************************************************998776.......************* PP

               DUF573  92 skkiWg 97 
                          ++ iWg
  GSBRNA2T00124135001 229 CMYIWG 234
                          *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.1E-31147234IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTKKRDPLEN PPAASSSGDD DEVDSSAGEE EEREDDDDAS SSEELPVKSH SSSAAVTIAV  60
PGKTAAQQAS DLDSGSETET DSDSDTEQPP NQRSGKAILA AAKSKKEKSP PPATKSGTKR  120
PSEGTSKETN SKRAKKTCED SKKPPAFQRL WTEEDEIAVL QGMIDFKNDT GNSPYDDTNA  180
YYDYIKKSIS FEVSKNQFMD KLRSLKKKYM GKEKPSFTKP HDQKSYRLCM YIWGPDGMGL  240
ETAVKSNGVS KKKTMKLDSV KQDLSFASSP NGKAVVDDDK RVKCDWFENS FLVRGIAGFG  300
VDEHYVKQRW SLVPVETKKT VEEKVKMLQA KEIEFVLQKT KILHEVTSMI AEASKNKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.130561e-108microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124135001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631626.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ9SYA91e-130STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A3P6C3X00.0A0A3P6C3X0_BRAOL; Uncharacterized protein
STRINGBo4g087160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-100DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]