PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00124297001

Common Name

GSBRNA2T00124297001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 322aa MW: 36838.5 Da PI: 6.2844

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00124297001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	11	64	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl+Wt+eLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl GSBRNA2T00124297001 11 PRLKWTCELHHRFVEAVNQLGGPNKATPKSLMKAMEIPGLTLYHLKSHLQKYRL 64 9****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-28	8	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-15	9	64	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-22	10	65	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-7	12	63	IPR001005	SANT/Myb domain
Pfam	PF14379	7.4E-21	113	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MSLVLSTDAN PRLKWTCELH HRFVEAVNQL GGPNKATPKS LMKAMEIPGL TLYHLKSHLQ 60 KYRLGKSLKF DDNRLEVSSA LETQEAESGN YSRDFRGSVN EENNNPANDR GLKITEALQL 120 QTEVQKKLHE QIEVQRNLQV KIEAQGKYLQ SVLMKAQQTL AGYTSSTLGM DFSRTKLSRF 180 ASLVNPSSSF SELTQVEEYE EEAEDARESF LYRKKTENRG IKLLRCSVES FLESSESSET 240 KRNNDNDERI SVELPLMEIK SEVMTDKKKR NHNDVVCMEC QLLKKIDFEV DDDEQELKLS 300 LNSYKKNYGD VPEPKKRLGF N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-18	12	66	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00124297001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013652227.1	0.0	myb family transcription factor PHL8-like
Swissprot	F4I274	1e-145	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A078F6P6	0.0	A0A078F6P6_BRANA; BnaA07g24220D protein
STRING	Bra003993.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	1e-148	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]