PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124423001
Common NameGSBRNA2T00124423001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 966aa    MW: 107716 Da    PI: 6.0365
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124423001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.79.2e-53341493117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwlk+ e++ iL+n+e++elt++++++p+sgsl Lyn++++++frkDG++w+kk+dg+++ E+he+LKvg+ve+l+cyYah+e++
  GSBRNA2T00124423001  34 QEaQTRWLKPPEVYFILKNHERYELTHKAPHKPTSGSLCLYNKRVLKFFRKDGHHWRKKRDGRAIAEAHERLKVGNVEALNCYYAHGEHD 123
                          6669************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p+fqrr++w+L+ e+++ivlvhy++v
  GSBRNA2T00124423001 124 PSFQRRIFWMLDLEYDHIVLVHYRDV 149
                          ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.02529155IPR005559CG-1 DNA-binding domain
SMARTSM010765.4E-6932150IPR005559CG-1 DNA-binding domain
PfamPF038598.8E-4535149IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-9421512IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.28E-18425509IPR014756Immunoglobulin E-set
CDDcd001024.78E-8425510No hitNo description
PfamPF018337.2E-10425508IPR002909IPT domain
Gene3DG3DSA:1.25.40.209.7E-15602698IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.91603695IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-15605697IPR020683Ankyrin repeat-containing domain
CDDcd002046.15E-13623695No hitNo description
PfamPF127963.5E-7624696IPR020683Ankyrin repeat-containing domain
SMARTSM002480.018636665IPR002110Ankyrin repeat
PROSITE profilePS5008810.686636668IPR002110Ankyrin repeat
SMARTSM002483500675704IPR002110Ankyrin repeat
SMARTSM0001511749771IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.004750778IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.25E-11750847IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.51796818IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334797823IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041798817IPR000048IQ motif, EF-hand binding site
SMARTSM000155.4E-4819841IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.7820844IPR000048IQ motif, EF-hand binding site
PfamPF006128.9E-5821841IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MCIFVALSEP SSPVFITNFW SHEFIKYEIR TLNQEAQTRW LKPPEVYFIL KNHERYELTH  60
KAPHKPTSGS LCLYNKRVLK FFRKDGHHWR KKRDGRAIAE AHERLKVGNV EALNCYYAHG  120
EHDPSFQRRI FWMLDLEYDH IVLVHYRDVS DAKEGKQSSG TVLQFSLKPS TLFSSPSYSH  180
HIGDSSTDIQ QQHSEANSGV VFSSNGGEEG SGSSYEFENR EAFKRLEEQL SLGDDNNLVP  240
NESLDGLQFL DFSTDVDHLV PPPATIHQRP ESSSKLGRCY GGYVGPQYNV AGQQRQESNR  300
LERSYGGYIG TEYHPNNLML VNNGSGGSGG SGESWKDVLE ACGASIALNS QEDSNWTYIN  360
QADQATLLLP QELDSSLQLP PPCYSELRAP ENNGYYNTML DDEGQTGPPL EQVMNPTVAY  420
NQKFTIQDIS PEWGYANETT KVIIIGSFLC DPTESTWACM FGNAQVPFEI VKEGVIRCQA  480
PPCGPGKVNL CITSGDGLSC SQIVEFEYRD KPDDRSSPRS SPDVLWLLVK FVQTLLLDRK  540
GNIEPSTDDD EWRRIIDKIR DGTATSSSTV DWLLQELLKD KLAAWLSSRS QDKDQTSCSL  600
SKQEQGIIHM VAGLGFDWAL SPILGHGVSI DFRDDNGWSA LHWAAQLGSE KMVAALIASG  660
ASAGAVTDPN TQDPVGKTPA SIAASNGHKG LAGYLSEVAL TNHLSSLTLE ETEDSIESAR  720
AEAEIAVKSI AGKSHPVNDD PQSLAALKNA AEAAARIQAA FRAHSFRKRQ QREADMYACL  780
KEYGIYADMS KQNVRNYHSA ALSIQKKYRG YKGRKEFLTK RQKAIMIQAH VRGYQTRKQY  840
KVICWAVGML DKVILRWRRK GVGLKGFRQD VESGEESEDE DILRVFRKQK VEGAVNEAFS  900
RVMSMTRTPE ARQQYHRVLT TYCKKKAELG KTETLGIGGS GGGFEDDDAL FDIADMEDDH  960
LFSLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.198400.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124423001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100261e-125AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105129.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A078F2240.0A0A078F224_BRANA; BnaA07g25100D protein
STRINGBra004096.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]