PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124534001
Common NameGSBRNA2T00124534001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 329aa    MW: 36790.2 Da    PI: 9.469
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124534001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-18115164155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  GSBRNA2T00124534001 115 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 164
                          79*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-10115164IPR001471AP2/ERF domain
CDDcd000188.24E-12115171No hitNo description
SuperFamilySSF541712.09E-15115172IPR016177DNA-binding domain
PROSITE profilePS5103217.28116172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16116171IPR001471AP2/ERF domain
SMARTSM003802.8E-30116178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLDLNLGTFS YYQEDHDRRV PLISTAGEEE SNLSLSSSSS TDSATDKPFI TFGILKRDGD  60
VVPLKEAEGL FPVVDARPNI EFSGDDRHWL NLSSLHRSNQ QMVKKGRRGP RSRSSHYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAYA AARAYDRAAI KFRGLDADIN FVVDDYRQDM  180
DKMKNLDKVE FVQTIRRESA SFGRGSSKYK GLTLQKCTQF KNHHDQIHLF QNRGWDAAAI  240
KYNELGKGVM KFGSHIKGNA HSDLELSLGI SSSSGNTKLT TSDYYKQSSI YLPVMTTMNT  300
LKTVAASSGF PFITMTTSSS SISTCFGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124534001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762750.0AY576275.1 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590878.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV681e-140SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLA0A078EZI90.0A0A078EZI9_BRANA; BnaC06g15540D protein
STRINGBo6g068410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.11e-132AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]