PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124566001
Common NameGSBRNA2T00124566001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 325aa    MW: 36015.1 Da    PI: 6.9309
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124566001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.8e-19227260134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR gp+g+ktLCnaCG++y++ +
  GSBRNA2T00124566001 227 CMHCEVTKTPQWRLGPNGPKTLCNACGVRYKSGR 260
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-851317IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.084221257IPR000679Zinc finger, GATA-type
SMARTSM004019.7E-16221271IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14225258IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-14225284No hitNo description
CDDcd002026.72E-15226273No hitNo description
PROSITE patternPS003440227252IPR000679Zinc finger, GATA-type
PfamPF003206.0E-17227260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MIGQSFFPED LDCGNFFDNM DDILDFPGGD IDVGFDIGES DSFPNIWTTH HDTWPPASDP  60
LFSSNTNTNS DSSPELYVPF EDIVKVERPP SLIEKKEDSF STNMDSSSSY STFRSSSPVS  120
VLESSSSSSQ TTNTTSLVLP GKQGRPRTKR PRPHLHEKDG VKDIVDSCLI VRIPKQFVSD  180
HSKMITKKKK KKGKVTSSSS SSGIDLEVNG NSNVDSYSLD QNPVRKCMHC EVTKTPQWRL  240
GPNGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFTPALHSN SHKKVAEMRS KRCKDGSYTT  300
EENDMQDLIP NNAYTGVDLK PRER*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191770.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124566001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896170.0AC189617.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH102A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592682.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-154GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A078F3B30.0A0A078F3B3_BRANA; GATA transcription factor
STRINGBo6g068260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-130GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]