PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124696001
Common NameGSBRNA2T00124696001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 261aa    MW: 28667.4 Da    PI: 9.7515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124696001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.58.7e-1315520875128
                  NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +r  + g+Wk t  ++++++k++++ g k+++v+yk+ + k  kt Wvm ey+l
  GSBRNA2T00124696001 155 RRESEGGRWKRTSGQEAIMDKTNKVEGYKESFVYYKKLKGKEDKTGWVMTEYSL 208
                          578899*******************************99999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.29582224IPR003441NAC domain
PfamPF023654.2E-7155208IPR003441NAC domain
SuperFamilySSF1019412.48E-15155223IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKATKAPSSS AHVSGGWFGF FSNASSVLSP GGTGFHSLLS SDLVELSGGP PKAEEISWID  60
GTPRREDRAM KSDEGFVGGL VVFELWRREG CRRKSRRSCV AVAIKSRRAT RVTLMLQIST  120
RGSIPSLLDS RIGQAARGTE EVSRLESVNW TVPGRRESEG GRWKRTSGQE AIMDKTNKVE  180
GYKESFVYYK KLKGKEDKTG WVMTEYSLHE GVHDELVLCY IRGKTEKKVE PKLVPKVENN  240
ILSNQVQDEE AGAGDAAQLA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124696001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892669e-80AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078EZT40.0A0A078EZT4_BRANA; BnaA03g19110D protein
TrEMBLM4C7L40.0M4C7L4_BRARP; Uncharacterized protein
STRINGBra000192.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-07NTM1-like 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]