PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124720001
Common NameGSBRNA2T00124720001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 363aa    MW: 40294.1 Da    PI: 7.8654
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124720001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.2e-08244264526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  GSBRNA2T00124720001 244 PCPEFRK-GSCPKGDSCEYAHG 264
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-1235156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1276161IPR020683Ankyrin repeat-containing domain
SMARTSM002487.2E-478108IPR002110Ankyrin repeat
PROSITE profilePS5029713.07178160IPR020683Ankyrin repeat-containing domain
CDDcd002044.17E-1280177No hitNo description
PfamPF136068.4E-480107IPR002110Ankyrin repeat
SMARTSM00248310114146IPR002110Ankyrin repeat
PROSITE profilePS5010314.145239266IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6239265IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-6244264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-6244266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4271303IPR000571Zinc finger, CCCH-type
SMARTSM0035667274297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCGSERNLCS SRTTFTEAEL IRTKAEQERV DATMSLLEYA ACDDLPSFKR QTEENSLDIN  60
EPGLWYCKRV GSKKMGFQER TPLMVAAMYG SIEVLIYIIS IGRSDVNRVS SDEEKVTALH  120
CTVSGCSVSI VQVIKILLDA SASPNNVDAN GNKPVDILVQ ASRFIPNQTR KAVELLVVSK  180
YPADATLPDI NEGVYGTDEF RMFSFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYPY  240
SCVPCPEFRK GSCPKGDSCE YAHGVFESWL HPSQYKTRLC KDETCCARKV CFFAHRRDEL  300
RAVNASTGSA IVSPPMSPSS PMGNNLSPRN GGLWQNRVNG LTPPPLQLNG SFVVVLMILL  360
LL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.173600.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124720001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534401e-137AK353440.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621926.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_013640482.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_013716870.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_022554838.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_022566463.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A078F2M60.0A0A078F2M6_BRANA; BnaA03g18900D protein
STRINGBo3g034750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]