PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125609001
Common NameGSBRNA2T00125609001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 150aa    MW: 17535.6 Da    PI: 9.7363
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125609001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26075.41e-23121111100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +C++C  +++ C+++C +a yfp+e + +++++ +lFG+ n+++++k +p+e+++ ++ss++ e+ a+++d ++G ++vi+kl ++++ +
  GSBRNA2T00125609001  12 RCCVCIEKNKICTRKCEFAAYFPNEVQGDYEAATRLFGTPNLVRMMKLAPHEQKHLLASSIFKEGAAWTDDNIRGGYRVIQKLIREIKLH 101
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++ l++++++
  GSBRNA2T00125609001 102 ETYLSMIRKK 111
                          ****999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.64411112IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-1912109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEALRTDTKH GRCCVCIEKN KICTRKCEFA AYFPNEVQGD YEAATRLFGT PNLVRMMKLA  60
PHEQKHLLAS SIFKEGAAWT DDNIRGGYRV IQKLIREIKL HETYLSMIRK KISEEKKLVL  120
LLHHYIYIMK FNNLHLSKNN YSMFNHIKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125609001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514403.12e-84PREDICTED: LOB domain-containing protein 5-like
SwissprotQ9C8V81e-34LBD5_ARATH; LOB domain-containing protein 5
TrEMBLA0A078F5E51e-108A0A078F5E5_BRANA; BnaA05g13400D protein
STRINGBo9g027690.13e-38(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36000.14e-37LOB domain-containing protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]